These are the sources and citations used to research a very specific introduction of metagenomics. This bibliography was generated on Cite This For Me on
In-text: (Chen and Pachter, 2005)
Your Bibliography: Chen, K. and Pachter, L., 2005. Bioinformatics for Whole-Genome Shotgun Sequencing of Microbial Communities. PLoS Computational Biology, 1(2), p.e24.
In-text: (DeLong, 2013)
Your Bibliography: DeLong, E., 2013. Microbial Metagenomics, Metatranscriptomics, and Metaproteomics. Burlington: Elsevier Science.
In-text: (What is Next-Generation DNA Sequencing | Train online, 2015)
Your Bibliography: Ebi.ac.uk. 2015. What is Next-Generation DNA Sequencing | Train online. [online] Available at: <http://www.ebi.ac.uk/training/online/course/ebi-next-generation-sequencing-practical-course/what-you-will-learn/what-next-generation-dna-> [Accessed 19 February 2015].
In-text: (16s rRNA Sequencing | Identify strains that may not be found using other methods, 2015)
Your Bibliography: Illumina.com. 2015. 16s rRNA Sequencing | Identify strains that may not be found using other methods. [online] Available at: <http://www.illumina.com/applications/microbiology/microbial-sequencing-methods/16S-rrna-sequencing.html> [Accessed 17 February 2015].
In-text: (Ledergerber and Dessimoz, 2011)
Your Bibliography: Ledergerber, C. and Dessimoz, C., 2011. Base-calling for next-generation sequencing platforms. Briefings in Bioinformatics, 12(5), pp.489-497.
In-text: (Semiconductor Sequencing Technology | Life Technologies, 2015)
Your Bibliography: Lifetechnologies.com. 2015. Semiconductor Sequencing Technology | Life Technologies. [online] Available at: <http://www.lifetechnologies.com/uk/en/home/life-science/sequencing/next-generation-sequencing/ion-torrent-next-generation-sequencing-technology.html> [Accessed 15 February 2015].
In-text: (Ma, Prince and Aagaard, 2014)
Your Bibliography: Ma, J., Prince, A. and Aagaard, K., 2014. Use of Whole Genome Shotgun Metagenomics: A Practical Guide for the Microbiome-Minded Physician Scientist. Seminars in Reproductive Medicine, 32(01), pp.005-013.
In-text: (Namiki, Hachiya, Tanaka and Sakakibara, 2012)
Your Bibliography: Namiki, T., Hachiya, T., Tanaka, H. and Sakakibara, Y., 2012. MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads. Nucleic Acids Research, 40(20), pp.e155-e155.
In-text: (OTU picking strategies in QIIME — Homepage, 2015)
Your Bibliography: Qiime.org. 2015. OTU picking strategies in QIIME — Homepage. [online] Available at: <http://qiime.org/1.7.0/tutorials/otu_picking.html> [Accessed 16 February 2015].
In-text: (Ramette, 2007)
Your Bibliography: Ramette, A., 2007. Multivariate analyses in microbial ecology. FEMS Microbiology Ecology, 62(2), pp.142-160.
In-text: (Schirmer et al., 2015)
Your Bibliography: Schirmer, M., Ijaz, U., D'Amore, R., Hall, N., Sloan, W. and Quince, C., 2015. Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. Nucleic Acids Research,.
In-text: (Sharpton, 2014)
Your Bibliography: Sharpton, T., 2014. An introduction to the analysis of shotgun metagenomic data. Front. Plant Sci., 5.
In-text: (Thomas, Gilbert and Meyer, 2012)
Your Bibliography: Thomas, T., Gilbert, J. and Meyer, F., 2012. Metagenomics - a guide from sampling to data analysis. Microbial Informatics and Experimentation, 2(1), p.3.
In-text: (Dr Umer Zeeshan Ijaz, 2015)
Your Bibliography: Userweb.eng.gla.ac.uk. 2015. Dr Umer Zeeshan Ijaz. [online] Available at: <http://userweb.eng.gla.ac.uk/umer.ijaz/> [Accessed 15 February 2015].
In-text: (Wooley, Godzik and Friedberg, 2010)
Your Bibliography: Wooley, J., Godzik, A. and Friedberg, I., 2010. A Primer on Metagenomics. PLoS Computational Biology, 6(2), p.e1000667.
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